Download

 Name                             Size  Description
 UMSBv.variants.1302.txt          114M  Variants on RefBeet-1.1
 UMSBv.unfiltered_genes.1302.gff3 109M  Positions of all coding genes predicted
 UMSBv.genes.1302.pep.fa           11M  Protein sequences
 UMSBv.genes.1302.mrna.fa          42M  Transcript sequences (incl. UTR)
 UMSBv.genes.1302.cds.fa           29M  CDS sequences
 UMSBv-1.0.masked.fna.gz          101M  Masked genome sequence
 UMSBv-1.0.fna.gz                 175M  Genome sequence
 README.txt                       1.0K  README

Data sets available for UMSBv-1.0, annotations as of February 2013
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Assembly
--------
- UMSBv-1.0.fna: Genome assembly of Illumina sequencing data of genotype 
STR06A6001 (Beta vulgaris ssp. vulgaris) using the SOAPdenovo software
- KDHBv-1.0.masked.fna: Masked genome assembly, repeats determined by 
RepeatModeler based on RefBeet-1.1, masked by RepeatMasker

Protein coding genes
--------------------
- UMSBv.genes.1302.cds.fa: CDS of predicted genes supported by mRNA evidence 
and filtered for transposable elements
- UMSBv.genes.1302.mrna.fa: mRNA sequences of these genes
- UMSBv.genes.1302.pep.fa: Translated protein sequences of these genes
- UMSBv.unfiltered_genes.1302.gff3: Positions of all protein coding genes 
predicted including genes which are not supported by mRNA evidence

Variants
--------
- UMSBv.variants.1302.txt: Variant positions on RefBeet-1.1 determined by 
mapping of UMSBv Illumina reads and by alignment of UMSBv-1.0 scaffolds.