Data sets available for YTiBv-1.0, annotations as of February 2013 ================================================================== Assembly -------- - YTiBv-1.0.fna: Genome assembly of Illumina sequencing data of genotype SynTilling (Beta vulgaris ssp. vulgaris) using the SOAPdenovo software - YTiBv-1.0.masked.fna: Masked genome assembly, repeats determined by RepeatModeler based on RefBeet-1.1, masked by RepeatMasker Protein coding genes -------------------- - YTiBv.genes.1302.cds.fa: CDS of predicted genes supported by mRNA evidence and filtered for transposable elements - YTiBv.genes.1302.mrna.fa: mRNA sequences of these genes - YTiBv.genes.1302.pep.fa: Translated protein sequences of these genes - YTiBv.unfiltered_genes.1302.gff3: Positions of all protein coding genes predicted including genes which are not supported by mRNA evidence Variants -------- - YTiBv.variants.1302.txt: Variant positions on RefBeet-1.1 determined by mapping of YTiBv Illumina reads and by alignment of YTiBv-1.0 scaffolds