Data sets available for RefTab-1
===================================

Assembly
--------
- RefTab-1.fa.gz: The chromosome-scale genome assembly of the inbred table beet 
genotype W357B (Beta vulgaris subsp. vulgaris var. vulgaris), based on PacBio
HiFi data and scaffolded using Hi-C (Omni-C) data

Repeats
-------
- RefTab-1.repeats.2601.gff3: Genome-wide repeat annotation generated with EDTA

Protein coding genes
--------------------
- RefTab-1.genes.2601.gff3: Structural annotation of protein-coding genes,
including gene, transcript, exon, and CDS features
- RefTab-1.genes.2601.cds: CDS of predicted gene models supported by evidence
- RefTab-1.genes.2601.mrna: mRNA sequences of these genes
- RefTab-1.genes.2601.aa: Translated protein sequences of these genes
- RefTab-1.genes.2601.functional: Functional annotation

Non-coding RNAs
---------------------
- RefTab-1.ncRNA.2601.annotation: Annotation of non-coding RNAs (all types)
- RefTab-1.tRNA.2601.annotation: Specific annotation of tRNAs

Methylation
-----------
- RefTab-1.methylation.cgmap.2601.tsv.gz: Genome-wide cytosine methylation calls
for RefTab-1 generated from EM-seq data and called using BSBolt, including
CG, CHG, and CHH sequence contexts