Download

 Name                        Size  Description
 Synteny/                      -   
 Chard-1.0.fna.gz            176M  Genome sequence
 Chard.unfiltered_genes.gff3  54M  Positions of all coding genes predicted
 Chard.variants.2104.txt      82M  Variants on RefBeet-1.2
 ChardSet-1.2104.cds          30M  CDS sequences
 ChardSet-1.2104.mrna         39M  Transcript sequences (incl. UTR)
 ChardSet-1.2104.pep          11M  Protein sequences
 README.txt                  869   README

Data sets available for Chard-1.0, annotations as of April 2021
==================================================================

Assembly
--------
- Chard-1.0.fna: Genome assembly of Illumina sequencing data of the 
chard genotype M4021 (Beta vulgaris ssp. vulgaris var cicla) using the 
SOAPdenovo software

Protein coding genes
--------------------
- Chard.genes.2104.cds.fa: CDS of predicted genes supported by mRNA evidence 
and filtered for transposable elements
- Chard.genes.2104.mrna.fa: mRNA sequences of these genes
- Chard.genes.2104.pep.fa: Translated protein sequences of these genes
- Chard.unfiltered_genes.2104.gff3: Positions of all protein coding genes 
predicted including genes which were not supported by mRNA evidence

Variants
--------
- Chard.variants.2104.txt: Variant positions on RefBeet-1.2 determined by 
mapping of Chard Illumina reads