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Access to assemblies, gene predictions, variants:
| Common name |
Scientific name |
Genotype |
Assembly |
Total size |
N50 size |
| Sugar beet |
Beta vulgaris ssp. vulgaris var. altissima |
KWS2320 |
RefBeet-1.1 |
569 Mbp |
1.7 Mbp |
| RefBeet-1.2 |
567 Mbp |
2.0 Mbp |
| RefBv |
508 Mbp |
76 kbp |
| KWS230 DH1440 |
KDHBv |
491 Mbp |
70 kbp |
| STR06A6001 |
UMSBv |
552 Mbp |
46 kbp |
| SynMono |
YMoBv |
470 Mbp |
39 kbp |
| SynTilling |
YTiBv |
487 Mbp |
55 kbp |
| Chard |
Beta vulgaris ssp. vulgaris var. cicla |
M4021 |
Chard |
604 Mbp |
107 kbp |
| Sea beet |
Beta vulgaris ssp. maritima |
KMR7PC4987 |
DeKBm |
- |
- |
| WB42 |
Bmar |
590 Mbp |
176 kbp |
| Beta patula |
Beta patula |
BETA548 |
Bpat |
624 Mbp |
271 kbp |
| Spinach |
Spinacia oleracea |
Viroflay |
Spinach |
498 Mbp |
19 kbp |
Sequencing reads are available in the Short Read Archive or the
GenBank GSS database.
Notes
- Total size and N50 size are based on sequences ≥ 500 bp (scaffolds plus un-scaffolded contigs).
- RefBeet was assembled using the Newbler software (raw output: RefBeet-0.9, N50 size 0.76 Mbp).
- RefBv and non-reference genotypes were assembled using the SOAPdenovo software.
- The gene set analysed in the Nature publication was predicted based on RefBeet-1.1.
- The current gene set BeetSet-2 was obtained based on RefBeet-1.2 after optimizing the prediction parameters for Caryophyllales taxa.