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Icon  Name                                      Size  Description
[   ] Augustus-hints-anchors.RefBeet-1.2.gff.gz  51M  
[   ] BeetSet-2.genes.1408.cds                   31M  CDS sequences
[   ] BeetSet-2.genes.1408.mrna                  44M  Transcript sequences (incl. UTR)
[   ] BeetSet-2.genes.1408.pep                   11M  Protein sequences
[TXT] BeetSet-2.unfiltered_genes.1408.gff3       52M  Positions of all coding genes predicted
[TXT] README.txt                                1.5K  README
[   ] RefBeet-1.2.fna.gz                        140M  Genome sequence
[   ] RefBeet-1.2.masked.fna.gz                 126M  Masked genome sequence
[   ] SMRT.KWS2320.corrected.fasta.gz           259M  
[TXT] validated-genes.SMRT.RefBeet-1.2.gff3     2.8M  
[TXT] validated-genes.manually.RefBeet-1.1.gff3 366K  

Data sets available for RefBeet-1.2
===================================

Assembly
--------
- RefBeet-1.2.fna: The genome assembly of reference genotype KWS2320 (Beta 
vulgaris ssp. vulgaris) integrated with genetic and physical maps as well
as GBS data (genotyping by sequencing)
- RefBeet-1.2.masked.fna: Masked genome assembly, repeats determined by 
RepeatModeler based on RefBeet-1.2, masked by RepeatMasker

Protein coding genes
--------------------
- *.genes.1408.cds.fa: CDS of predicted gene models supported by mRNA evidence
- *.genes.1408.mrna.fa: mRNA sequences of these genes
- *.genes.1408.pep.fa: Translated protein sequences of these genes
- *.unfiltered_genes.1408.gff3: Positions of all protein coding genes
predicted including genes which are not supported by mRNA evidence

Validated gene models
---------------------
- validated-genes.SMRT.RefBeet-1.2.gff3: 2267 gene models predicted  by
  Augustus and validated by SMRT full-insert sequences; additional 665 gene
  models solely inferred from full-insert SMRT sequences
- validated-genes.manually.RefBeet-1.1.gff3: 400 manually validated gene models

Corrected SMRT sequences
------------------------
- SMRT.KWS2320.corrected.fasta.gz: SMRT sequences corrected with Illumina
  short reads using the proovread software.

Augustus hints and anchors
------------------------
- Augustus-hints-anchors.RefBeet-1.2.gff.gz: Gene models were calculated using
these mRNA-seq exon and intron hints, intron anchors, repeat hints, SMRT anchors,
hints from Sanger ESTs and Roche/454 sequences.