Download

 Name                             Size  Description
 KDHBv.variants.1302.txt          130M  Variants on RefBeet-1.1
 KDHBv.genes.1302.mrna.fa          40M  Transcript sequences (incl. UTR)
 README.txt                       1.0K  README
 KDHBv.genes.1302.pep.fa           10M  Protein sequences
 KDHBv.unfiltered_genes.1302.gff3  97M  Positions of all coding genes predicted
 KDHBv-1.0.masked.fna.gz           84M  Masked genome sequence
 KDHBv-1.0.fna.gz                 149M  Genome sequence
 KDHBv.genes.1302.cds.fa           28M  CDS sequences

Data sets available for KDHBv-1.0, annotations as of February 2013
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Assembly
--------
- KDHBv-1.0.fna: Genome assembly of Illumina sequencing data of genotype 
KWS230 DH1440 (Beta vulgaris ssp. vulgaris) using the SOAPdenovo software
- KDHBv-1.0.masked.fna: Masked genome assembly, repeats determined by 
RepeatModeler based on RefBeet-1.1, masked by RepeatMasker

Protein coding genes
--------------------
- KDHBv.genes.1302.cds.fa: CDS of predicted genes supported by mRNA evidence 
and filtered for transposable elements
- KDHBv.genes.1302.mrna.fa: mRNA sequences of these genes
- KDHBv.genes.1302.pep.fa: Translated protein sequences of these genes
- KDHBv.unfiltered_genes.1302.gff3: Positions of all protein coding genes 
predicted including genes which are not supported by mRNA evidence

Variants
--------
- KDHBv.variants.1302.txt: Variant positions on RefBeet-1.1 determined by 
mapping of KDHBv Illumina reads and by alignment of KDHBv-1.0 scaffolds.