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Name Size Description
![[ ]](/style/fileF.png)
RefTab-1.genes.2601.cds 35M CDS sequences
RefTab-1.genes.2601.functional 18M Functional annotation
![[ ]](/style/compressed.gif)
RefTab-1.fa.gz 177M Genome sequence
RefTab-1.methylation.cgmap.2601.tsv.gz 1.3G Genome-wide cytosine methylation calls
RefTab-1.ncRNA.2601.annotation 2.3M Positions of non-coding RNAs
RefTab-1.repeats.2601.gff3 185M Positions of repetitive elements
RefTab-1.tRNA.2601.annotation 53K Positions of tRNAs
RefTab-1.genes.2601.aa 13M Protein sequences
README.txt 1.2K README
RefTab-1.genes.2601.gff3 51M Structural annotation of protein-coding genes
RefTab-1.genes.2601.mrna 39M Transcript sequences (incl. UTR)
Data sets available for RefTab-1
===================================
Assembly
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- RefTab-1.fa.gz: The chromosome-scale genome assembly of the inbred table beet
genotype W357B (Beta vulgaris subsp. vulgaris var. vulgaris), based on PacBio
HiFi data and scaffolded using Hi-C (Omni-C) data
Repeats
-------
- RefTab-1.repeats.2601.gff3: Genome-wide repeat annotation generated with EDTA
Protein coding genes
--------------------
- RefTab-1.genes.2601.gff3: Structural annotation of protein-coding genes,
including gene, transcript, exon, and CDS features
- RefTab-1.genes.2601.cds: CDS of predicted gene models supported by evidence
- RefTab-1.genes.2601.mrna: mRNA sequences of these genes
- RefTab-1.genes.2601.aa: Translated protein sequences of these genes
- RefTab-1.genes.2601.functional: Functional annotation
Non-coding RNAs
---------------------
- RefTab-1.ncRNA.2601.annotation: Annotation of non-coding RNAs (all types)
- RefTab-1.tRNA.2601.annotation: Specific annotation of tRNAs
Methylation
-----------
- RefTab-1.methylation.cgmap.2601.tsv.gz: Genome-wide cytosine methylation calls
for RefTab-1 generated from EM-seq data and called using BSBolt, including
CG, CHG, and CHH sequence contexts