Download

 Name                                        Size  Description
 Spinach-1.0.fna.gz                          168M  Genome sequence
 Spinach-1.0.1.fna.gz                        128M  Genome sequence
 SpiSet-1.unfiltered_genes.1408.gff3          52M  Positions of all coding genes predicted
 SpiSet-1.genes.1408.pep                     9.7M  Protein sequences
 SpiSet-1.genes.1408.mrna                     36M  Transcript sequences (incl. UTR)
 SpiSet-1.genes.1408.cds                      28M  CDS sequences
 README.txt                                  886   README
 Augustus-hints-anchors.Spinach-1.0.1.gff.gz  42M

Data sets available for Spinach-1.0
===================================

Assembly
--------
- Spinach-1.0.1.fna: 2229 sequences mainly from Agrobacterium contamination excluded or trimmed
- Spinach-1.0.fna: Genome assembly of Illumina sequencing data of genotype 
Viroflay (Spinacia oleracea) using the SOAPdenovo software

Protein coding genes
--------------------
- *.genes.1408.cds.fa: CDS of predicted gene models supported by mRNA evidence
- *.genes.1408.mrna.fa: mRNA sequences of these genes
- *.genes.1408.pep.fa: Translated protein sequences of these genes
- *.unfiltered_genes.1408.gff3: Positions of all protein coding genes
predicted including genes which are not supported by mRNA evidence

Augustus hints and anchors
--------------------------
- Augustus-hints-anchors.Spinach-1.0.1.gff.gz: Gene models were calculated using
these repeat hints, mRNA-seq hints and anchors.