Download

 Name                             Size  Description
 README.txt                       1.0K  README
 YMoBv.genes.1302.pep.fa           10M  Protein sequences
 YMoBv.genes.1302.cds.fa           28M  CDS sequences
 YMoBv.genes.1302.mrna.fa          40M  Transcript sequences (incl. UTR)
 YMoBv-1.0.masked.fna.gz           87M  Masked genome sequence
 YMoBv.unfiltered_genes.1302.gff3  95M  Positions of all coding genes predicted
 YMoBv.variants.1302.txt          110M  Variants on RefBeet-1.1
 YMoBv-1.0.fna.gz                 152M  Genome sequence

Data sets available for YMoBv-1.0, annotations as of February 2013
==================================================================

Assembly
--------
- YMoBv-1.0.fna: Genome assembly of Illumina sequencing data of genotype 
SynMono (Beta vulgaris ssp. vulgaris) using the SOAPdenovo software
- YMoBv-1.0.masked.fna: Masked genome assembly, repeats determined by 
RepeatModeler based on RefBeet-1.1, masked by RepeatMasker

Protein coding genes
--------------------
- YMoBv.genes.1302.cds.fa: CDS of predicted genes supported by mRNA evidence 
and filtered for transposable elements
- YMoBv.genes.1302.mrna.fa: mRNA sequences of these genes
- YMoBv.genes.1302.pep.fa: Translated protein sequences of these genes
- YMoBv.unfiltered_genes.1302.gff3: Positions of all protein coding genes 
predicted including genes which are not supported by mRNA evidence

Variants
--------
- YMoBv.variants.1302.txt: Variant positions on RefBeet-1.1 determined by 
mapping of YMoBv Illumina reads and by alignment of YMoBv-1.0 scaffolds